Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915590.1_cds_XP_016465387.1_58344
CDS Infomation

[gene=LOC107788225] [db_xref=GeneID:107788225] [protein=pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like] [protein_id=XP_016465387.1] [location=complement(27237..29792)] [gbkey=CDS]
Sequence

ATGATAACTCTCACTCTTCCCTCTCCCGCCAAACTCATCCCTCCTTCCCCCAAAAACCTC
ACATCCCTTCAAATTCACAGAAGAAACCCTAATTTCGAAGCTCTGAAGGATCGTTTGATT
CGACAAGCCAATGTTGGAAACCTCAAGCAAGCAATCTCGACCCTTGATCACATTTCCCAA
ATGGGTCTTACCCCTGACCTCACCTCCTGTACAGTTCTTCTCAAATCTTGCATCAGAACT
CGAAATTTCCAGCTCGGTGAACTTCTACACTCTAAACTCAATGACTTATCACTCGAACCG
GACACAATTGTTCTTAACTCGTTGATAAGTTTATATGCTAAAATGGGTAATTGGGAAACT
GCTAAAAAGATTTTCGAGAACATGGGGGAGAAGAGAGATTTAGTCTCTTGGAGTGCCATG
ATATCTTGTTTCGCGCATTGTGGTATGGAGTTAGAAGCTGTGGTTACTTTCTTTGATATG
GTGGAGTTTGGGGAGTACCCGAATCAGTTCTGCTTCTCTGCAGTGATTCAGGCGTGTTGT
AGCGGAGTGTTTGGGTGGATTGGGTTGGTGATATTTGGGTTTGTGGTTAAAACTGGGTAT
TTTGAGTCTGATATTTGTGTTGGTTGTGCACTGATTGATTTGTTTGCCAAAGGGTTTTGT
GACTTGAGGTCAGCTAAGCAAGTGTTTGATAGAATGCCTGAGAGGAATCTTGTCACGTGG
ACTTTGATGATTACTAGATTTTCTCAACTTGGTGCTGACAGGGATGCTGTTGGGCTGTTC
TTGGAAATGGTTTCTGAAGGATTTGTTCCTGATAGGTTTACGTTTAGTGGTGTTTTATCG
GCTTGTGCTCAGCTGGGATTGTCTTTGTTTGGGAGACAATTGCATGGTTGGGTGGTTAAG
TCTAGGTTGTCTTCCGATGTTTGTGTTGGGTGCAGTTTGGTGGACATGTATGCAAAGTGT
ACAATGGATGGCTCTATGAATGATTCAAGAAAGGTTTTTGATCAGATGGCTGATCATAAT
GTCATGTCTTGGACTGCTATTATTACAGGATATGTGCAAAGCGGATGCTATGATATGGAG
GCCATTGAGTTGTACTGTAGAATGATAGAAGGTCCAGTTAAACCGAACCATTTTACATTT
TCTAGTCTTTTAAAGGCATGTGGAAATCTTTCAAATCCTGCTATAGGCGAACAGATCTAT
AATCATGCAGTGAAATTGGGTCTTGCATCTGTGAACTGTGTAGCGAATTCGCTAATTAGC
ATGTATGCCAAGTCTGGTAGGATGGAAGAAGCCCGAACAGCTTTTGAACTTCTGTTTAAG
AAGAATTTGGTATCTTATAACATAATACTTGATGGATATTCAAAGAATCTGAATTCCGCA
GAAGCTTTTGAACTTTTCAGCCAGATAGACTCTGAAGTTGGGGTTGATGCTTTCACGTTT
GCTAGTTTGTTGAGTGGAGCTGCAAGTATAGGTGCAGTTGGAAAGGGAGAGCAAATCCAT
GCTCGGGTCTTGAAAGCAGGGATCCAGTCCTACCAATCTGTCTGCAATGCTTTGATATCT
ATGTATTCTAGATGCGGTAACATAGAGGCTGCTTCTCAAGTTTTTGAAAGAATGGAAGAT
AGAAATGTAATATCTTGGACTTCAATTATAACAGGTTTTGCAAAACATGGTTTTGCCCAT
AGAGCTTTGGAATTGTTCAATCAAATGCTTGGGGCTAGTATAAAACCAAACGAGATCACG
TACATTGCTGTTTTATCAGCTTGTAGCCATGTTGGTTTAGTTAAGGAGGGATGGAAATAT
TTTGATTCAATGTCCAAAGATCACAGGATAACACCTAGGATGGAACATTATGCATGCATG
GTTGATTTGTTAAGCCGATCAGGCTCTCTGGAAAAGGCTGTTCAGTTTATTAAATCACTG
CCCTTGAATGTCGATGCTCTTGTTTGGCGCACCTTGCTTGGGGCATGCCAGGTGCATGGC
AATTTACAACTGGGGAAGTACGCTGCAGAAATGATTCTTGAACAGGAGCCAAGTGATCCA
GCAGCACACGTCTTACTATCTAACTTGTATGCTTCGAGGGGTGAATGGGAGGAGGTAGCA
AAGATCAGAAAAGACATGAAAGAAAAGAGATTGGTGAAGGAAGCTGGATGTAGTTGGATA
GAAGCTGAAAATAGTGTCCACAGGTTTTATGTAGGCGACACAAATCATCCCAGAGCGAAG
GAGATATATGAAAAATTAGATAAGGTAGCACTTAAAATAAAGGAGATTGGCTATGTACCC
AACACAGACTTGGTGCTTCACGAGGTGGAGGATGAACAAAAGGAGCAATATCTTTTCCAG
CACAGTGAGAAAATTGCTTTGGCGTTTGGTCTTATTAGCACATCCAACTCCAAGTCAAAG
CCCATCAGAATATTCAAAAATCTTCGAGTATGTGGAGATTGCCATAATGCAATGAAGTTT
ATATCGGTAGCGGAGGGAAGAGAGATAATTGTTAGAGATTCTAATCGTTTTCACCATATT
AAAGATGGACTCTGCTCCTGCAATGACTATTGGTGA

Peptide Sequence

PEP ID

XP_016465387.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Nicotiana tabacum]
Sequence

MITLTLPSPAKLIPPSPKNLTSLQIHRRNPNFEALKDRLIRQANVGNLKQAISTLDHISQ
MGLTPDLTSCTVLLKSCIRTRNFQLGELLHSKLNDLSLEPDTIVLNSLISLYAKMGNWET
AKKIFENMGEKRDLVSWSAMISCFAHCGMELEAVVTFFDMVEFGEYPNQFCFSAVIQACC
SGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTW
TLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVK
SRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDME
AIELYCRMIEGPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLIS
MYAKSGRMEEARTAFELLFKKNLVSYNIILDGYSKNLNSAEAFELFSQIDSEVGVDAFTF
ASLLSGAASIGAVGKGEQIHARVLKAGIQSYQSVCNALISMYSRCGNIEAASQVFERMED
RNVISWTSIITGFAKHGFAHRALELFNQMLGASIKPNEITYIAVLSACSHVGLVKEGWKY
FDSMSKDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHG
NLQLGKYAAEMILEQEPSDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWI
EAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQ
HSEKIALAFGLISTSNSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHI
KDGLCSCNDYW

Transcript Sequence

Gene sequence data has not been registered.